Hey, it seems, like i don't quite get how does TF interact with VAO's and GL_ELEMENT_ARRAY_BUFFER's. I try to make my animation system to work with transform feedback. So i have initial VAO1 containing all necessary attributes and i want to draw it with transform feedback enabled, outputting results into ARRAY_BUFFER, which is bound to another VAO2 used to finally draw.

Here's initialization of TF and related buffers:
Code :
//transform feedback
        if(isAnimated) {
            //setup transform feedback
            glGenTransformFeedbacks(1, &transformFeedbackObject);
            glBindTransformFeedback(GL_TRANSFORM_FEEDBACK, transformFeedbackObject);
            //create output VAO
            glGenVertexArrays(1, &animationOutputVAO);
            glGenBuffers(1, &animationOutputBufferObject);
            glBindBuffer(GL_ARRAY_BUFFER, animationOutputBufferObject);
            glBufferData(GL_ARRAY_BUFFER, modelStorage[modelId].data.numVertices * sizeof(float), NULL, GL_DYNAMIC_COPY);
            glBindBufferBase(GL_TRANSFORM_FEEDBACK_BUFFER, 0, animationOutputBufferObject); //bind as TF output
            glBindBuffer(GL_ELEMENT_ARRAY_BUFFER, modelStorage[modelId].data.indexObject); //use original indices
            //i thought, maybe i can't just bind orginal element array here, but this doesn't make any difference:
            /*glGenBuffers(1, &animationOutputIndexObject);
            glBindBuffer(GL_ELEMENT_ARRAY_BUFFER, animationOutputIndexObject);
            glBufferData(GL_ELEMENT_ARRAY_BUFFER, modelStorage[modelId].data.indices.size() * sizeof(short), &modelStorage[modelId].data.indices[0], GL_DYNAMIC_DRAW);*/
            //vx, nx, tx
            glVertexAttribPointer(0, 3, GL_FLOAT, GL_FALSE, sizeof(float) * attributeStride, BUFFER_OFFSET(0));
            glVertexAttribPointer(1, 3, GL_FLOAT, GL_FALSE, sizeof(float) * attributeStride, BUFFER_OFFSET(12));
            glVertexAttribPointer(2, 2, GL_FLOAT, GL_FALSE, sizeof(float) * attributeStride, BUFFER_OFFSET(24));
            //bone ids, bone weight
            glVertexAttribPointer(3, 3, GL_FLOAT, GL_FALSE, sizeof(float) * attributeStride, BUFFER_OFFSET(32));
            glVertexAttribPointer(4, 3, GL_FLOAT, GL_FALSE, sizeof(float) * attributeStride, BUFFER_OFFSET(44));
            glBindTransformFeedback(GL_TRANSFORM_FEEDBACK, 0);
disclamer: some function call order is a consequence of a bit of desperation.

Drawing to TF:

Code :
glBindTransformFeedback(GL_TRANSFORM_FEEDBACK, transformFeedbackObject);
        currentShader.applyProgram(15, 0);
        glUniformMatrix4fv(currentShader.uniform_bones, maxNumBones, GL_FALSE, &boneMatrices[0]);
        glBindVertexArray(modelStorage[modelId].data.vertexArrayObject); //source VAO
        for(unsigned s = 0, off = 0; s < modelStorage[modelId].data.numSurfaces; s++)
            glDrawElements(GL_TRIANGLES, modelStorage[modelId].data.numIndices[s], GL_UNSIGNED_SHORT, BUFFER_OFFSET(off));
            off += modelStorage[modelId].data.numIndices[s] * sizeof(short);
        glBindTransformFeedback(GL_TRANSFORM_FEEDBACK, 0);

So... When i draw animationOutputVAO with glDrawElements, i get just a mess of triangles. Any clues on what am i doing wrong? The problem is that couple of examples on TF i found are used for particles and they don't use neither VAO, nor element buffers, so i'm not sure how do i accomplish what i'm trying to do. So i'm resorting to forum and heavy documentation + source code googling.